README
¶
mbdr
mbdr is a utility for querying and parsing binary mcell reaction data output files
Directories
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| Path | Synopsis |
|---|---|
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cmd
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frogAnalyzer
command
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the original excess-calcium-binding-site model (Dittrich et al., Biophys.
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frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the original excess-calcium-binding-site model (Dittrich et al., Biophys. |
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frogAnalyzerY
command
frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the second sensor facilitation model (see Ma et al., J. Neurophys, 2014)
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frogAnalyzer determines vesicle release events and latencies for our frog NMJ model according to the second sensor facilitation model (see Ma et al., J. Neurophys, 2014) |
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mbdr
command
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mouseAnalyzer
command
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the the original excess-calcium-binding-site model (Dittrich et al., Biophys.
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mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the the original excess-calcium-binding-site model (Dittrich et al., Biophys. |
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mouseAnalyzerY
command
mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the second sensor faciliation model (see Ma et al., J. Neurophys, 2014)
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mouseAnalyzer determines vesicle release events and latencies for our mouse NMJ 6 AZ model with two synaptic vesicles each according to the second sensor faciliation model (see Ma et al., J. Neurophys, 2014) |
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Package libmbd contains data structures and helper routines for extracting reaction data from binary mcell reaction data output files
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Package libmbd contains data structures and helper routines for extracting reaction data from binary mcell reaction data output files |
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Package parser is a wrapper around the main parsing routines.
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Package parser is a wrapper around the main parsing routines. |
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parseAPI1
Package parseAPI1 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_1.
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Package parseAPI1 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_1. |
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parseAPI2
Package parseAPI2 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_2.
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Package parseAPI2 contains the infrastructure for parsing MCell binary reaction data output that was written according to API version MCELL_BINARY_API_2. |
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util
Package util contains low lever helper function for parsing byte buffers
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Package util contains low lever helper function for parsing byte buffers |
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Package releaser determines vesicle release events and latencies for our from and mouse NMJ AZ models.
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Package releaser determines vesicle release events and latencies for our from and mouse NMJ AZ models. |
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Version provides the version tag for all the mbdr tools
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Version provides the version tag for all the mbdr tools |
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